Songs
- Prokofiev: Toccata, Op. 11 (Arr. Guillou for Organ)Thomas Trotter
- Weber: Jubelouvertüre (Arr. Best for Organ)Thomas Trotter
- Suite, Op. 5: III. ToccataThomas Trotter
- Suite, Op. 5: II. SicilienneThomas Trotter
- Suite, Op. 5: I. PréludeThomas Trotter
- Chant Donné (en hommage à Jean Gallon)Thomas Trotter
- Prélude sur l'Introït de l'Épiphanie, Op. 13Thomas Trotter
- Scherzo, Op. 2Thomas Trotter
- Prélude et Fugue sur le nom d'Alain, Op. 7: II. FugueThomas Trotter
- Prélude et Fugue sur le nom d'Alain, Op. 7: I. PréludeThomas Trotter
- Méditation, Op. post.Thomas Trotter
- Guillaume Tell: Overture [Live]Thomas Trotter
- Poulenc: Organ Concerto, FP 93: I. Andante – II. Allegro giocoso – III. Subito andante moderato – IV. Tempo allegro, molto agitato – V. Très calme. Lent – VI. Tempo de l'allegro initial – VII. Tempo introduction. Largo [Live at Concertgebouw, Amsterdam, 1993]Thomas Trotter, European Community Youth Orchestra & Bernard Haitink
- Bach: In dulci jubilo, BWV 729Thomas Trotter
- Mozart: Andantino, K.236 (After Gluck)Thomas Trotter
- Mozart: Fantasia & Fugue, K.383a/bThomas Trotter
- Mozart: Kleine Gigue in G, K.574Thomas Trotter
- Mozart: Fugue in G Minor, K.401Thomas Trotter
- Mozart: Molto allegro in G Major, K.72aThomas Trotter
- Mozart: Adagio in B minor, K.540Thomas Trotter
- Mozart: Andante in D Major, K15oThomas Trotter
- Mozart: Andante in B Flat Major, K15iiThomas Trotter
- Mozart: Adagio and Allegro in F Minor, K.594Thomas Trotter
- Mozart: Suite in C, K.399: 1. OvertureThomas Trotter
- 3 Anthems, Op. 27: No. 2, God is Gone UpThomas Trotter
- 2 Psalms, H117: No. 2, Psalm 148Thomas Trotter
- Give Unto the Lord, Op. 74Thomas Trotter
- 3 Motets, Op. 2: No. 1, Ave, verum corpusThomas Trotter
- Molto allegro in G Major, K.72aThomas Trotter
- 4. RésurrectionThomas Trotter
- Liszt: Prometheus, symphonic poem No. 5, S.99Thomas Trotter