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August 14, 2025 8 mins

Your gut microbes don’t just digest food, they can power you. In this episode, we uncover a hidden energy stream: short-chain fatty acids produced when microbes ferment plant fibers, potentially supplying anywhere from 2% to 10% of your daily calories. A new Cell study quantifies this microbial contribution with a unique level of precision, revealing how dietary choices drives the yield. We look at the mechanisms behind this energy exchange, , and show why increasing fiber intake is one of the most potent, underappreciated tools for improving metabolic health immune function, disease resistance, etc. We can now say it also contributes to energy flux.

00:00 Introduction: The Hidden Fuel Source

00:13 The Role of Gut Microbes in Energy Production

01:16 How Gut Microbes Transform Fiber into Energy

02:49 Measuring Microbial Energy Contribution

04:51 Impact of Diet on Microbial Energy Harvest

06:32 Significance of Microbial Fermentation

07:37 Implications for Human Health and Diet

09:19 Conclusion: Feeding Your Microbial Partners

PMID: 40744013

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Episode Transcript

Available transcripts are automatically generated. Complete accuracy is not guaranteed.
Speaker 1 (00:00):
Some people can eat less and still seem to have more
energy.
They aren't secretly snackingor running on caffeine.
Their bodies are tapping into ahidden fuel source, one that
most of us overlook entirely.
This energy doesn't come fromtheir food so much as from
trillions of microscopic tenantsin their gut.
These microbes transform thetoughest parts of plants fibers
that you can't digest intocompounds your body can absorb

(00:23):
and burn, and a new study inCell has finally measured with
unprecedented precision just howmuch energy they're giving you.
The results might make yourethink what's really powering
your day.
For the sake of setting thescene, imagine if part of your

(00:46):
grocery bill was quietly beingpaid by bacteria not in a
science fiction sense, but rightnow inside you.
In people eating fiber-richdiets, gut microbes can cover up
to one-tenth of daily calorieneeds.
But how Surely, you're sayingto yourself right now.
How can this be if fiber is notdigested and absorbed?
Well, the answer is that ourmicrobiota can supply us energy

(01:08):
by turning what you can't digestfibers, resistant starches and
other complex carbohydrates intocompounds that you can.
This is energy harvested in theshadows of your metabolism.
It happens in the largeintestine and anoxic meaning low
oxygen environment, wheretrillions of microbes ferment
plant fibers, releasing shortchain fatty acids acetate,

(01:31):
propionate, butyrate, along withsmaller amounts of lactate,
formate and sucinate From thenutrients that fuel microbial
growth.
That being fibers, most of thecarbon from that food doesn't
vanish.
It's reborn as these acids andit's now thought that almost all
are absorbed back into the body.
Even dietary protein and thehost's own mucin can be

(01:53):
fermented, though there are sideplayers here, accounting for
only about one-fifth or 20% ofyour gut bacteria's energy needs
.
The main act and primary sourceof energy for your gut
microbiota is carbohydratefermentation, and while the
total amount of this microbialenergy supply in Western diets
is modest about 2-5% of dailyexpenditure it's possible that

(02:14):
it can triple with fiber-richeating.
Change the diet and you changethe yield.
Change the microbes and youalter the mix of acids.
But how do you measuresomething this invisible?
You can't just put a caloriecounter in the colon.
The researchers behind a newcell study built a systems-level
framework part lab experiment,part metabolic accounting to do
exactly that.

(02:35):
First, they recreated gutfermentation outside the body.
They took 22 of the most commongut bacterial species and grew
them under controlled,oxygen-free conditions, no
matter the growth medium or pH.
These microbes showedremarkable consistency.
Over 90% of the carbon fromcarbohydrates ended up as
fermentation acids.

(02:55):
They also found that thisefficiency barely budged under
different conditions.
Growth rates could vary, butthe per-cell rate of turning
carbs into acids stayed the same.
That's because of the mainenergy cost for these bacteria.
Making new biomass, in otherwords cell replication and
growth, is the primary energycost for our gut bacteria, and
that doesn't change much.

(03:16):
Next came the integration step.
They took these per-cellfermentation rates and merged
them with human data onmicrobiome composition,
digestion and diet.
They even ran two completelydifferent calculations, one
starting from the amount ofbacterial biomass lost in feces
and another starting from theamount of fiber and resistant
starch that escapes digestion inthe small intestine.

(03:37):
Both gave the same answer.
In typical Western diet, gutmicrobes produce about 450
millimoles of fermentation acidsper day.
Almost all of that over 98%, isabsorbed by us.
The host Protein and mucin canbe fermented too, but again, at
most they contribute one-fifthof the total.
Carbohydrates are the clearfuel source, and when they

(04:00):
scaled the model across diets,the pattern was clear.
What you eat, not whichmicrobes you have, sets the
total energy capture.
For Western diets this worksout to just 2-5% of your daily
calories, but under fiber-richdiets that fraction can triple.
In the Hadza of Tanzania, whoeat seasonal tuber-heavy diets,

(04:21):
it can hit 10% or more.
And in lab mice, whereresistant carbohydrate intake is
high, microbial fermentationcan supply over 21% of total
energy needs.
That number is important, notbecause we have to care so much
about how much energy a rodent'smicrobiota supplies, but
because it tells us thatexperimental models using
rodents may exaggerate somesystemic effects compared to

(04:43):
humans.
So in that way it's importantinformation.
To make sure their calculationsweren't an artifact of one
method, the researcherscross-checked everything.
Estimating microbial energyharvest from the amount of fiber
that reached the colon gave thesame answer as estimating it
from bacterial biomass that'slost in feces.
Even a theoretical calculationbased purely on the ATP required

(05:04):
to grow new bacterial cellscame out nearly identical.
This consistency mattersbecause it means we can trust
the number in the case of thisparticular study, and the number
tells us that more than 90% ofthe carbon in
microbiota-accessiblecarbohydrates ends up in
fermentation products and thatmost of that is absorbed.
These compounds, short-chainfatty acids, aren't just

(05:26):
calories.
They're chemical signalers.
Butyrate powers colon cells,fueling ATP production to
maintain the gut lining.
Acetate can travel to the liver, where it influences glucose
production.
Together, these acids shapeimmune signaling, gut pH and
even the brain-gut communication.
When diets are stripped offiber, microbes don't become

(05:46):
less efficient, but they haveless fuel.
The proportion of carbohydratecarbon converted into acids
stays high, yet the total amountof these acids produced falls.
That means less microbialenergy returned to the host and
fewer of the signaling moleculesthat power colon cells,
influence liver glucoseproduction and help regulate
inflammation.
Over time, this reduction intotal output could shift

(06:11):
metabolic balance and raiserisks tied to chronic
inflammation and impairedglucose control, and that's why
the study's findings do morethan quantify a hidden calorie
source.
They make dietary fiber an evenmore urgent public health
priority.
In humans, microbialfermentation can cover anywhere
from 1.7 to 12% of daily energyneeds, depending on the diet.
In laboratory mice it's over21%, why the gap Mice eat far

(06:36):
more resistant carbohydrates andtheir chow is often autoclaved,
making it even less digestibleto the host and more available
to microbes.
For them, this microbialpartnership is a cornerstone of
energy balance, but for us it'smore of a supplementary income
system.
Again, this difference matters.
It means we can't assume everyeffect seen in a mouse will be

(06:57):
as strong as in a human and,like any good investigation,
this one has blind spots.
The analysis froze microbiomecomposition in place.
It didn't model how communitieschange over time.
Cross-feeding between microbeswhere one species waste becomes
another's fuel wasn't fullymapped, and the focus was on the
big-ticket metabolites likeacetate, propionate and butyrate

(07:19):
.
Smaller, less abundantcompounds like hydrogen, sulfide
and trimethylamine were leftout, even though they can impact
health.
Even so, this is the mostprecise accounting to date of
the biggest single metabolicexchange between humans and
their microbiota.
It gives us hard numbers forsomething we've long suspected.
When you feed your microbes,they feed you back.

(07:40):
Remember that this energypartnership runs on supply.
The more microbial accessiblecarbohydrates you send
downstream from legumes, wholegrains, fibers, vegetables and
tubers, the more short-chainfatty acids your microbes can
return to you.
Even modest increases in fibercan move you from the lower end
of the range 2% of daily energytoward the higher fiber

(08:01):
benchmarks of 5-10%.
Second, it's not just aboutcalories.
These acids are signalingmolecules that influence
metabolism, immunity and guthealth in ways we're only
beginning to quantify.
They help maintain the gutbarrier, modulate inflammation
and fine-tune energy homeostasis.
And finally, diet is the leverthat matters most.

(08:21):
You can't buy a differentmicrobiome at the store, but you
can feed the one you have inways that increase the benefits
it provides.
When we think about diet, wetend to count what goes into our
mouths and what gets burned byour muscles.
But there's a third player inthat equation, one that's been
with us for millions of years,quietly harvesting energy from
the scraps we can't digest.

(08:41):
Feed them well, and they'llkeep paying part of your energy
bill Until next time.
Stay healthy.
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